Selected Publications

For a complete list of publications, click here

Liu J, Gunapati S, Mihelich NT, Stec AO, Michno JM, Stupar RM. (2019) Genome Editing in Soybean with CRISPR/Cas9. Methods Mol Biol. 1917:217-234.

Patil GB, Lakhssassi N, Wan J, Song L, Zhou Z, Klepadlo M, Vuong TD, Stec AO, Kahil SS, Colantonio V, Valliyodan B, Rice JH, Piya S, Hewezi T, Stupar RM, Meksem K, Nguyen HT. (2019) Whole-genome re-sequencing reveals the impact of the interaction of copy number variants of the rhg1 and Rhg4 genes on broad-based resistance to soybean cyst nematode. Plant Biotechnol J. (in press).

Diers BW, et al. (2018). Genetic Architecture of Soybean Yield and Agronomic Traits. G3 (Bethesda). doi: 10.1534/g3.118.200332.

Michno JM, Stupar RM. (2018). The importance of genotype identity, genetic heterogeneity, and bioinformatic handling for properly assessing genomic variation in transgenic plants. BMC Biotechnol. 18:38. doi: 10.1186/s12896-018-0447-9.

Curtin SJ, Xiong Y, Michno JM, Campbell BW, Stec AO, Čermák T, Starker C, Voytas DF, Eamens AL, Stupar RM. (2018). CRISPR/Cas9 and TALENs generate heritable mutations for genes involved in small RNA processing of Glycine max and Medicago truncatula. Plant Biotechnol J. 16:1125-1137. doi: 10.1111/pbi.12857.

Bandillo NB, Anderson JE, Kantar MB, Stupar RM, Specht JE, Graef GL, Lorenz AJ. (2017). Dissecting the Genetic Basis of Local Adaptation in Soybean. Sci Rep. 7:17195.

Dobbels AA, Michno J, Campbell BW, Virdi KS, STec AO, Muehlbauer GJ, Naeve SL, Stupar RM. (2017). An induced chromosomal translocation in soybeans disrupts a KASI ortholog and is associated with a high sucrose and low oil seed phenotype. G3 (Bethesda). doi:10.1534/g3.116.038596.

Curtin SJ, Tiffin P, Guhlin J, Trujillo D, Burghart L, Atkins P, Baltes NJ, Denny R, Voytas DF, Stupar RM, Young ND. (2017). Validating Genome-Wide Association candidates controlling quantitative variation in nodulation. Plant Physiol 173:921-931. doi: 10.1104/pp.16.01923.

Campbell BW, Hofstad AN, Sreekanta S, Fu F, Kono TJY, O'Rourke JA, Vance CP, Muehlbauer GJ, Stupar RM. (2016). Fast Neutron induced structural rearrangements at a soybean NAP1 locus result in gnarled trichomes. Theor Appl Genet 129:1725-1738. doi:10.1007/s00122-016-2735-x.

Anderson JE, Michno JM, Kono TJY, Stec AO, Campbell BW, Curtin SJ, Stupar RM. (2016). Genomic variation and DNA repair associated with soybean transgenesis: A comparison to cultivars and mutagenized plants. BMC Biotechnol 16:41. doi: 10.1186/s12896-016-0271-z.

Kono TJY, Fu F, Mohammadi M, Hoffman PJ, Liu C, Stupar RM, Smith Kp, Tiffin P, Fay JC, Morrell PL. (2016). The role of deleterious substitutions in crop genomes. Mol Biol Evol 33:2307-2317. doi: 10.1093/molbev/msw102.

Anderson JE, Kono TJ, Stupar RM, Kantar MB, Morrell PL. (2016). Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans. G3 (Bethesda) 4:835-843. doi: 10.1534/g3.116.026914.

Campbell BW, Stupar RM. (2016). Soybean Mutant and Germplasm Resources: Current Status and Future Prospects. Curr Protoc Plant Biol 1:307-327. doi: 10.1002/cppb.20015.

Curtin SJ, Michno JM, Campbell BW, Gil-Humanes J, Mathioni SM, Hammond R, Gutierrez-Gonzalez JJ, Donohue RC, Kantar MB, Eamens AL, Meyers BC, Voytas DF, Stupar RM. (2015). microRNA Maturation and microRNA Target Gene Expression Regulation are Severely Disrupted in Soybean dicer-like1 Double Mutants. G3 (Bethesda) 6:423-433. doi: 10.1534/g3.115.022137.

Campbell BW, Mani D, Curtin SJ, Slattery RA, Michno JM, Ort DR, Schaus PJ, Palmer RG, Orf JH, Stupar RM. (2015). Identical substitutions in magnesium chelatease paralogs result in chlorophyll-deficient soybean mutants. G3 (Bethesda) 5:123-131. doi: 10.1534/g3.114.015255.

Michno JM, Wang X, Liu J, Curtin SJ, Kono TJ, Stupar RM. (2015). CRISPR/Cas mutagenesis of soybean and Medicago truncatula using a new web-tool and a modified Cas9 enzyme. GM Crops Food 6: 243-252. doi: 10.1080/21645698.2015.1106063.

Bolon YT, Stec AO, Michno JM, Roessler J, Bhaskar PB, Ries L, Dobbels AA, Campbell BW, Young NP, Anderson JE, Grant DM, Orf JH, Naeve SL, Muehlbaurer GJ, Vance CP, Stupar RM. (2014). Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean. Genetics 198:967-981. doi:10.1534/genetics.114.170340.

Anderson JE, Kantar MB, Kono TY, Fu F, Stec AO, Song Q, Cregan PB, Specht JE, Diers BW, Cannon SB, McHale LK, Stupar RM. (2014). A Roadmap for Functional Structural Variants in the Soybean Genome. G3 (Bethesda) 4:1307-1318. doi: 10.1534/g3.114.011551.

Kantar MB, Betts K, Michno JM, Luby JJ, Morrell PL, Hulke BS, Stupar RM, Wyse DL. (2014). Evaluating an interspecific Helianthus annuus x Helianthus tuberosus population for use in a perennial sunflower breeding program. Field Crops Res 155:254-264. doi: 10.1016/j.fcr.2013.04.018.

Stupar RM, Specht JE. (2013). Insights from the Soybean (Glycine max and G. soja) Genome: Past, Present, and Future. Adv Agron 118:177-204. doi: 10.1016/B978-0-12-405942-9.00004-9.

Curtin SJ, Voytas DF, Stupar RM. (2012). Genome Engineering of Crops with Designer Nucleases. Plant Genome 5:42-50. doi: 10.3835/plantgenome2012.06.0008.

McHale LK, Haun WJ, Xu WW, Bhaskar PB, Anderson JE, Hyten DL, Gerhardt DJ, Jeddeloh JA, Stupar RM. (2012). Structural variants in the soybean genome localize to clusters of biotic stress response genes. Plant Physiol 159:1295-1308. doi: 10.1104/pp.112.194605.

Curtin SJ, Zhang F, Sander JD, Haun Wj, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM. (2011). Targeted mutagenesis of duplicated genes in soybean with zinc finger nucleases. Plant Physiol 156:466-473. doi: 10.1104/pp.111.172981.

Bolon YT, Haun WJ, Xu WW, Grant D, Stacey MG, Nelson RT, Gerhardt DJ, Jeddeloh JA, Stacey G, Muehlbauer GJ, Orf JH, Naeve SL, Stupar RM, Vance CP. (2011). Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol 156:240-253. doi: 10.1104/pp.110.170811.

Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM. (2011). The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol 155:645-655. doi: 10.1104/pp.110.166736.

Lin JY, Stupar RM, Hans C, Hyten DL, Jackson SA. (2010). Structural aand functional divergence of a 1-MMb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell 22:2545-2561. doi: 10.1105/tpc.110.074229.

Severin AJ, Peiffer G, Xu WW, Hyten DL, Bucciarelli B, O'Rourke JA, Bolon YT, Grant D, Farmer AD, May GD, Vance CP, Shoemaker RC, Stupar RM. (2010). An integrative approach to genomic introgression mapping. Plant Physiol 154:3-12. doi: 10.1104/pp. 110.158949.

Stupar RM. (2010) Into the Wild: The soybean genome meets its undomesticated relative. Proc Natl Acad Sci USA 107:21947-21948. doi: 10.1073/pnas.1016809108.